Sample name: gold5
Looper stats summary
| sample_name |
gold5 |
| sample_description |
ATAC-seq from dendritic cell (ENCLB384NOX) |
| treatment_description |
Homo sapiens dendritic in vitro differentiated cells trea... |
| organism |
human |
| protocol |
ATAC-seq |
| data_source |
SRA |
| SRR |
SRR5210390 |
| SRX |
SRX2523854 |
| Sample_geo_accession |
GSM2471245 |
| Sample_series_id |
GSE94173 |
| read_type |
PAIRED |
| Sample_instrument_model |
Illumina HiSeq 2000 |
| read1 |
/project/shefflab/data/sra_fastq//SRR5210390_1.fastq.gz |
| read2 |
/project/shefflab/data/sra_fastq//SRR5210390_2.fastq.gz |
| Raw_reads |
104881014 |
| Fastq_reads |
104881014 |
| Trimmed_reads |
104879682 |
| Trim_loss_rate |
0.0 |
| Mapped_reads |
77851214 |
| QC_filtered_reads |
5811232 |
| Aligned_reads |
72039982 |
| Alignment_rate |
68.69 |
| Total_efficiency |
68.69 |
| Mitochondrial_reads |
8198 |
| NRF |
0.94 |
| PBC1 |
0.97 |
| PBC2 |
32.2 |
| Unmapped_reads |
1375826 |
| Duplicate_reads |
1264637 |
| Dedup_aligned_reads |
70775345.0 |
| Dedup_alignment_rate |
67.48 |
| Dedup_total_efficiency |
67.48 |
| Read_length |
42 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.9511 |
| TSS_score |
13.6 |
| Peak_count |
285312 |
| File_mb |
3272 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Aligned_reads_rCRSd |
19947382.0 |
| Alignment_rate_rCRSd |
19.02 |
| Aligned_reads_human_repeats |
5705260.0 |
| Alignment_rate_human_repeats |
5.44 |
| Time |
0:11:21 |
| Success |
09-15-12:28:54 |
