Sample name: gold3
Looper stats summary
| sample_name |
gold3 |
| sample_description |
ATAC-seq from dendritic cell (ENCLB887PKE) |
| treatment_description |
Homo sapiens dendritic in vitro differentiated cells trea... |
| organism |
human |
| protocol |
ATAC-seq |
| data_source |
SRA |
| SRR |
SRR5210398 |
| SRX |
SRX2523862 |
| Sample_geo_accession |
GSM2471249 |
| Sample_series_id |
GSE94177 |
| read_type |
PAIRED |
| Sample_instrument_model |
Illumina NextSeq 500 |
| read1 |
/project/shefflab/data/sra_fastq//SRR5210398_1.fastq.gz |
| read2 |
/project/shefflab/data/sra_fastq//SRR5210398_2.fastq.gz |
| Raw_reads |
166092252 |
| Fastq_reads |
166092252 |
| Trimmed_reads |
166090588 |
| Trim_loss_rate |
0.0 |
| Mapped_reads |
123924925 |
| QC_filtered_reads |
9613401 |
| Aligned_reads |
114311524 |
| Alignment_rate |
68.82 |
| Total_efficiency |
68.82 |
| Mitochondrial_reads |
14199 |
| NRF |
0.9 |
| PBC1 |
0.95 |
| PBC2 |
18.89 |
| Unmapped_reads |
2236283 |
| Duplicate_reads |
3152724 |
| Dedup_aligned_reads |
111158800.0 |
| Dedup_alignment_rate |
66.93 |
| Dedup_total_efficiency |
66.93 |
| Read_length |
40 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.9696 |
| TSS_score |
11.0 |
| Peak_count |
380540 |
| File_mb |
4809 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Aligned_reads_rCRSd |
29229450.0 |
| Alignment_rate_rCRSd |
17.6 |
| Aligned_reads_human_repeats |
10699930.0 |
| Alignment_rate_human_repeats |
6.44 |
| Time |
0:16:01 |
| Success |
09-15-12:33:34 |
