Sample name: gold1
Looper stats summary
| sample_name |
gold1 |
| sample_description |
ATAC-seq from dendritic cell (ENCLB065VMV) |
| treatment_description |
Homo sapiens dendritic in vitro differentiated cells trea... |
| organism |
human |
| protocol |
ATAC-seq |
| data_source |
SRA |
| SRR |
SRR5210416 |
| SRX |
SRX2523872 |
| Sample_geo_accession |
GSM2471255 |
| Sample_series_id |
GSE94182 |
| read_type |
PAIRED |
| Sample_instrument_model |
Illumina HiSeq 2000 |
| read1 |
/project/shefflab/data/sra_fastq//SRR5210416_1.fastq.gz |
| read2 |
/project/shefflab/data/sra_fastq//SRR5210416_2.fastq.gz |
| Raw_reads |
137944752 |
| Fastq_reads |
137944752 |
| Trimmed_reads |
137924802 |
| Trim_loss_rate |
0.01 |
| Mapped_reads |
103770862 |
| QC_filtered_reads |
8341982 |
| Aligned_reads |
95428880 |
| Alignment_rate |
69.19 |
| Total_efficiency |
69.18 |
| Mitochondrial_reads |
14500 |
| NRF |
0.94 |
| PBC1 |
0.97 |
| PBC2 |
32.71 |
| Unmapped_reads |
3342300 |
| Duplicate_reads |
2001987 |
| Dedup_aligned_reads |
93426893.0 |
| Dedup_alignment_rate |
67.74 |
| Dedup_total_efficiency |
67.73 |
| Read_length |
76 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.9721 |
| TSS_score |
9.3 |
| Peak_count |
382788 |
| File_mb |
6493 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Aligned_reads_rCRSd |
21049900.0 |
| Alignment_rate_rCRSd |
15.26 |
| Aligned_reads_human_repeats |
9761740.0 |
| Alignment_rate_human_repeats |
7.08 |
| Time |
0:16:56 |
| Success |
09-15-12:33:08 |
