Sample name: gold2
Looper stats summary
sample_name |
gold2 |
sample_description |
ATAC-seq from dendritic cell (ENCLB811FLK) |
treatment_description |
Homo sapiens dendritic in vitro differentiated cells trea... |
organism |
human |
protocol |
ATAC-seq |
data_source |
SRA |
SRR |
SRR5210450 |
SRX |
SRX2523906 |
Sample_geo_accession |
GSM2471300 |
Sample_series_id |
GSE94222 |
read_type |
PAIRED |
Sample_instrument_model |
Illumina HiSeq 2000 |
read1 |
/project/shefflab/data/sra_fastq//SRR5210450_1.fastq.gz |
read2 |
/project/shefflab/data/sra_fastq//SRR5210450_2.fastq.gz |
Raw_reads |
28408648 |
Fastq_reads |
28408648 |
Trimmed_reads |
28408460 |
Trim_loss_rate |
0.0 |
Mapped_reads |
16069631 |
QC_filtered_reads |
1124479 |
Aligned_reads |
14945152 |
Alignment_rate |
52.61 |
Total_efficiency |
52.61 |
Mitochondrial_reads |
801 |
NRF |
0.93 |
PBC1 |
0.96 |
PBC2 |
27.69 |
Unmapped_reads |
116839 |
Duplicate_reads |
272965 |
Dedup_aligned_reads |
14672187.0 |
Dedup_alignment_rate |
51.65 |
Dedup_total_efficiency |
51.65 |
Read_length |
50 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.9219 |
TSS_score |
13.1 |
Peak_count |
420249 |
File_mb |
1604 |
Read_type |
PAIRED |
Genome |
hg38 |
Aligned_reads_rCRSd |
11074130.0 |
Alignment_rate_rCRSd |
38.98 |
Aligned_reads_human_repeats |
1147860.0 |
Alignment_rate_human_repeats |
4.04 |
Time |
0:04:07 |
Success |
09-15-12:21:37 |