Sample name: gold2
Looper stats summary
| sample_name |
gold2 |
| sample_description |
ATAC-seq from dendritic cell (ENCLB811FLK) |
| treatment_description |
Homo sapiens dendritic in vitro differentiated cells trea... |
| organism |
human |
| protocol |
ATAC-seq |
| data_source |
SRA |
| SRR |
SRR5210450 |
| SRX |
SRX2523906 |
| Sample_geo_accession |
GSM2471300 |
| Sample_series_id |
GSE94222 |
| read_type |
PAIRED |
| Sample_instrument_model |
Illumina HiSeq 2000 |
| read1 |
/project/shefflab/data/sra_fastq//SRR5210450_1.fastq.gz |
| read2 |
/project/shefflab/data/sra_fastq//SRR5210450_2.fastq.gz |
| Raw_reads |
28408648 |
| Fastq_reads |
28408648 |
| Trimmed_reads |
28408460 |
| Trim_loss_rate |
0.0 |
| Mapped_reads |
16069631 |
| QC_filtered_reads |
1124479 |
| Aligned_reads |
14945152 |
| Alignment_rate |
52.61 |
| Total_efficiency |
52.61 |
| Mitochondrial_reads |
801 |
| NRF |
0.93 |
| PBC1 |
0.96 |
| PBC2 |
27.69 |
| Unmapped_reads |
116839 |
| Duplicate_reads |
272965 |
| Dedup_aligned_reads |
14672187.0 |
| Dedup_alignment_rate |
51.65 |
| Dedup_total_efficiency |
51.65 |
| Read_length |
50 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.9219 |
| TSS_score |
13.1 |
| Peak_count |
420249 |
| File_mb |
1604 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Aligned_reads_rCRSd |
11074130.0 |
| Alignment_rate_rCRSd |
38.98 |
| Aligned_reads_human_repeats |
1147860.0 |
| Alignment_rate_human_repeats |
4.04 |
| Time |
0:04:07 |
| Success |
09-15-12:21:37 |
