Sample name: tutorial2
Looper stats summary
| sample_name |
tutorial2 |
| protocol |
ATAC |
| organism |
human |
| read1 |
/scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... |
| read2 |
/scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... |
| read_type |
paired |
| File_mb |
27 |
| Read_type |
paired |
| Genome |
hg38 |
| Raw_reads |
1000000 |
| Fastq_reads |
1000000 |
| Trimmed_reads |
1000000 |
| Trim_loss_rate |
0.0 |
| Aligned_reads_rCRSd |
100556.0 |
| Alignment_rate_rCRSd |
10.06 |
| Aligned_reads_human_repeats |
19842.0 |
| Alignment_rate_human_repeats |
1.98 |
| Mapped_reads |
879537 |
| QC_filtered_reads |
3707 |
| Aligned_reads |
875830 |
| Alignment_rate |
87.58 |
| Total_efficiency |
87.58 |
| Mitochondrial_reads |
30 |
| NRF |
1.0 |
| PBC1 |
1.0 |
| PBC2 |
437908.0 |
| Unmapped_reads |
65 |
| Duplicate_reads |
0 |
| Dedup_aligned_reads |
875830.0 |
| Dedup_alignment_rate |
87.58 |
| Dedup_total_efficiency |
87.58 |
| Read_length |
42 |
| Genome_size |
3099922541 |
| TSS_score |
13.2 |
| Peak_count |
534448 |
| FRiP |
0.92 |
| Time |
0:39:02 |
| Success |
09-21-15:22:06 |
