Sample name: tutorial1
Looper stats summary
| sample_name |
tutorial1 |
| protocol |
ATAC |
| organism |
human |
| read1 |
/scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... |
| read2 |
/scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... |
| read_type |
paired |
| File_mb |
27 |
| Read_type |
paired |
| Genome |
hg38 |
| Raw_reads |
1000000 |
| Fastq_reads |
1000000 |
| Trimmed_reads |
1000000 |
| Trim_loss_rate |
0.0 |
| Aligned_reads_rCRSd |
99360.0 |
| Alignment_rate_rCRSd |
9.94 |
| Aligned_reads_human_repeats |
20102.0 |
| Alignment_rate_human_repeats |
2.01 |
| Mapped_reads |
880479 |
| QC_filtered_reads |
3539 |
| Aligned_reads |
876940 |
| Alignment_rate |
87.69 |
| Total_efficiency |
87.69 |
| Mitochondrial_reads |
18 |
| NRF |
1.0 |
| PBC1 |
1.0 |
| PBC2 |
438465.0 |
| Unmapped_reads |
59 |
| Duplicate_reads |
0 |
| Dedup_aligned_reads |
876940.0 |
| Dedup_alignment_rate |
87.69 |
| Dedup_total_efficiency |
87.69 |
| Read_length |
42 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.9572 |
| TSS_score |
14.3 |
| Peak_count |
535285 |
| FRiP |
0.92 |
| Time |
0:38:48 |
| Success |
09-21-14:43:02 |
