Sample name: gold1
Looper stats summary
sample_name |
gold1 |
sample_description |
ATAC-seq from dendritic cell (ENCLB065VMV) |
treatment_description |
Homo sapiens dendritic in vitro differentiated cells trea... |
organism |
human |
protocol |
ATAC-seq |
data_source |
SRA |
SRR |
SRR5210416 |
SRX |
SRX2523872 |
Sample_geo_accession |
GSM2471255 |
Sample_series_id |
GSE94182 |
read_type |
PAIRED |
Sample_instrument_model |
Illumina HiSeq 2000 |
read1 |
/project/shefflab/data/sra_fastq//SRR5210416_1.fastq.gz |
read2 |
/project/shefflab/data/sra_fastq//SRR5210416_2.fastq.gz |
Raw_reads |
137944752 |
Fastq_reads |
137944752 |
Trimmed_reads |
137924802 |
Trim_loss_rate |
0.01 |
Mapped_reads |
103770862 |
QC_filtered_reads |
8341982 |
Aligned_reads |
95428880 |
Alignment_rate |
69.19 |
Total_efficiency |
69.18 |
Mitochondrial_reads |
14500 |
NRF |
0.94 |
PBC1 |
0.97 |
PBC2 |
32.71 |
Unmapped_reads |
3342300 |
Duplicate_reads |
2001987 |
Dedup_aligned_reads |
93426893.0 |
Dedup_alignment_rate |
67.74 |
Dedup_total_efficiency |
67.73 |
Read_length |
76 |
Genome_size |
3099922541 |
Frac_exp_unique_at_10M |
0.9721 |
TSS_score |
9.3 |
Peak_count |
382788 |
File_mb |
6493 |
Read_type |
PAIRED |
Genome |
hg38 |
Aligned_reads_rCRSd |
21049900.0 |
Alignment_rate_rCRSd |
15.26 |
Aligned_reads_human_repeats |
9761740.0 |
Alignment_rate_human_repeats |
7.08 |
Time |
0:16:56 |
Success |
09-15-12:33:08 |