Looper PEPATAC_tutorial summary

sample_name protocol organism read1 read2 read_type File_mb Read_type Genome Raw_reads Fastq_reads Trimmed_reads Trim_loss_rate Aligned_reads_rCRSd Alignment_rate_rCRSd Aligned_reads_human_repeats Alignment_rate_human_repeats Mapped_reads QC_filtered_reads Aligned_reads Alignment_rate Total_efficiency Mitochondrial_reads NRF PBC1 PBC2 Unmapped_reads Duplicate_reads Dedup_aligned_reads Dedup_alignment_rate Dedup_total_efficiency Read_length Genome_size Frac_exp_unique_at_10M TSS_score Peak_count FRiP Time Success
tutorial ATAC human /project/shefflab/data//pepatac/tutorial_r1.fastq.gz /project/shefflab/data//pepatac/tutorial_r2.fastq.gz PAIRED 55 PAIRED hg38 2000000 2000000 2000000 0.0 199916.0 10.0 39944.0 2.0 1760016 7246 1752770 87.64 87.64 48 1.0 1.0 876373.0 124 0 1752770.0 87.64 87.64 42 3099922541 0.9601 13.8 972215 0.92 1:05:44 05-26-12:12:12

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