Looper PEPATAC_tutorial summary

sample_name protocol organism read1 read2 read_type File_mb Read_type Genome Raw_reads Fastq_reads Trimmed_reads Trim_loss_rate Aligned_reads_rCRSd Alignment_rate_rCRSd Aligned_reads_human_repeats Alignment_rate_human_repeats Mapped_reads QC_filtered_reads Aligned_reads Alignment_rate Total_efficiency Mitochondrial_reads NRF PBC1 PBC2 Unmapped_reads Duplicate_reads Dedup_aligned_reads Dedup_alignment_rate Dedup_total_efficiency Read_length Genome_size Frac_exp_unique_at_10M TSS_score Peak_count FRiP Time Success
tutorial1 ATAC human /scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... /scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... paired 27 paired hg38 1000000 1000000 1000000 0.0 99360.0 9.94 20102.0 2.01 880479 3539 876940 87.69 87.69 18 1.0 1.0 438465.0 59 0 876940.0 87.69 87.69 42 3099922541 0.9572 14.3 535285 0.92 0:38:48 09-21-14:43:02
tutorial2 ATAC human /scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... /scratch/jps3dp/data/tmp/pepatac_tutorial/tools/pepatac/e... paired 27 paired hg38 1000000 1000000 1000000 0.0 100556.0 10.06 19842.0 1.98 879537 3707 875830 87.58 87.58 30 1.0 1.0 437908.0 65 0 875830.0 87.58 87.58 42 3099922541 NA 13.2 534448 0.92 0:39:02 09-21-15:22:06

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