tutorial


Log file Pipeline profile Pipeline commands Stats summary file


Looper stats summary
sample_name tutorial
protocol ATAC
organism human
read1 /sfs/lustre/scratch/jps3dp/tools/databio//pepatac/examples/data/tutorial_r1.fastq.gz
read2 /sfs/lustre/scratch/jps3dp/tools/databio//pepatac/examples/data/tutorial_r2.fastq.gz
read_type paired
File_mb 54.5006
Read_type paired
Genome hg38
Raw_reads 2000000
Fastq_reads 2000000
Trimmed_reads 2000000
Trim_loss_rate 0.0
Aligned_reads_rCRSd 199916.0
Alignment_rate_rCRSd 10.0
Aligned_reads_human_repeats 39944.0
Alignment_rate_human_repeats 2.0
Mapped_reads 1758578
QC_filtered_reads 7196.0
Aligned_reads 1751382
Alignment_rate 87.57
Total_efficiency 87.57
Mitochondrial_reads 28.0
NRF 1.0
PBC1 1.0
PBC2 875678.0
Unmapped_reads 1562.0
Duplicate_reads 0
Dedup_aligned_reads 1751382.0
Dedup_alignment_rate 87.57
Dedup_total_efficiency 87.57
TSS_Score 13.3252162768
Peak_count 16028
FRiP 0.110150726683
Time 0:36:21
Success 01-08-10:54:45