Sample name: tutorial
Looper stats summary
| sample_name |
tutorial |
| protocol |
ATAC |
| organism |
human |
| read1 |
/project/shefflab/data//pepatac/tutorial_r1.fastq.gz |
| read2 |
/project/shefflab/data//pepatac/tutorial_r2.fastq.gz |
| read_type |
PAIRED |
| File_mb |
55 |
| Read_type |
PAIRED |
| Genome |
hg38 |
| Raw_reads |
2000000 |
| Fastq_reads |
2000000 |
| Trimmed_reads |
2000000 |
| Trim_loss_rate |
0.0 |
| Aligned_reads_rCRSd |
199916.0 |
| Alignment_rate_rCRSd |
10.0 |
| Aligned_reads_human_repeats |
39944.0 |
| Alignment_rate_human_repeats |
2.0 |
| Mapped_reads |
1760016 |
| QC_filtered_reads |
7246 |
| Aligned_reads |
1752770 |
| Alignment_rate |
87.64 |
| Total_efficiency |
87.64 |
| Mitochondrial_reads |
48 |
| NRF |
1.0 |
| PBC1 |
1.0 |
| PBC2 |
876373.0 |
| Unmapped_reads |
124 |
| Duplicate_reads |
0 |
| Dedup_aligned_reads |
1752770.0 |
| Dedup_alignment_rate |
87.64 |
| Dedup_total_efficiency |
87.64 |
| Read_length |
42 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.9601 |
| TSS_score |
13.8 |
| Peak_count |
972215 |
| FRiP |
0.92 |
| Time |
1:05:44 |
| Success |
05-26-12:12:12 |
